Case 39
- Wangpan Shi
- Jan 29
- 2 min read
A 65-year-old female presented with a large submucosal mass in stomach.

What's the likely diagnosis and the immuno you would like to confirm?
IHC
Keratin
SMA, desmin
CD117 (C-KIT)
DOG-1
Answer
This is a case of gastrointestinal stromal tumor (GIST). The differential diagnosis of a spindle cell neoplasm in GI submucosa include: GIST, schwannoma, leiomyoma/leiomyosarcoma, inflammatory fibroid polyp, synovial sarcoma, or inflammatory myofibroblastic tumor. It can show intramural, submucosal, or subserosal masses with spindle, epithelioid, or mixed cell types. They typically test positive for KIT and/or DOG1 markers, and SDHB loss is seen in SDH-deficient cases. Additionally, approximately 85% of GISTs have mutations in the KIT or PDGFRA genes. SDH-deficient GISTs typically display an epithelioid appearance and are often composed of multiple nodules with a plexiform pattern in the tumor cells. In contrast to standard GISTs, these tumors more frequently show invasion of lymphatic and blood vessels as well as metastasis to lymph nodes.
Differential Diagnosis | Key Features | Immunohistochemistry (IHC) Markers |
Spindle cell or epithelioid morphology, often with a whorled or nested growth pattern | Positive: KIT (CD117), DOG1, CD34 (variable); Negative: S100, desmin, keratins |
Leiomyoma / Leiomyosarcoma | Smooth muscle differentiation, interlacing fascicles of spindle cells with cigar-shaped nuclei, eosinophilic cytoplasm | Positive: SMA, desmin; Negative: KIT, DOG1 |
Schwannoma | Spindle cell tumor with Antoni A and B areas, Verocay bodies, thick-walled hyalinized vessels | Positive: S100 (diffuse), SOX10; Negative: KIT, DOG1, CD34 |
Fibromatosis (Desmoid Tumor) | Long fascicles of spindle cells, infiltrative growth pattern, bland nuclei, collagen deposition | Positive: β-catenin (nuclear), SMA (variable); Negative: KIT, DOG1 |
Inflammatory Myofibroblastic Tumor (IMT) | Spindle to stellate-shaped myofibroblasts with lymphoplasmacytic infiltration | Positive: ALK (60-70%), SMA, desmin; Negative: KIT, DOG1 |
Synovial Sarcoma | Biphasic (epithelial and spindle components) or monophasic spindle cell type | Positive: TLE1, cytokeratins (variable), EMA; Negative: KIT, DOG1 |
Solitary Fibrous Tumor (SFT) | Spindle cell tumor with a "patternless" architecture and prominent branching "staghorn" vessels | Positive: STAT6 (nuclear), CD34; Negative: KIT, DOG1 |
Melanoma (Metastatic or Primary) | Pleomorphic spindle or epithelioid cells, pigmentation, high mitotic rate | Positive: S100, SOX10, HMB-45, Melan-A; Negative: KIT, DOG1 |
Sarcomatoid Carcinoma | Poorly differentiated carcinoma with spindle cell morphology | Positive: Pancytokeratin, EMA; Negative: KIT, DOG1 |
Ewing Sarcoma / PNET | Small round blue cell tumor, necrosis, high mitotic rate | Positive: CD99, FLI1 (nuclear); Negative: KIT, DOG1 |
Case credit: UCSD Pathology
Author: Wangpan Shi, MD

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